From Kawasaki specifications:
Variable Valve Timing
With variable valve timing (a category first), the camshaft timing varies in response to rpm and throttle position. The result is high torque output in the low and medium rpm ranges and awesome high-rpm power at the top end. Combustion efficiency is also improved, contributing to enhanced fuel efficiency.
An ECU-controlled OCV (Oil Control Valve) changes the pressure of oil in the chambers of an actuator located at the end of the intake camshaft. As the pressure changes, oil is fed into or out of the chambers via holes in the camshaft. The changing volume of oil causes the actuator to move, rotating the camshaft, thereby advancing and retarding the valve timing.
The intake timing is retarded at low rpm, reducing the valve overlap for cleaner, more efficient combustion in the low-rpm range.
Camshafts
Special cam profiles are used to suit the variable valve timing. The new cams have less lift than those of the ZZR1400.
Lightweight, highly rigid forged camshafts are used for precise valve timing at high rpm.
No, the R1 has a system that changes the length of the air inlet pipes inside the airbox. Each throttle body has an air inlet pipe inside the airbox. At higher rpms the R1's system can switch to shorter air inlet pipes which allows for greater air flow with reduced pressure drops in the inlet air piping.
The R1 also has an electric servo throttle system. When you turn the throttle grip the cables turn a position sensor similar to the throttle position sensor on the FJR. This electrical sensor sends a signal to the computer and the computer sends a signal to the electric throttle servo. Thus the computer can take your throttle input and massage and manipulate it and then operate the throttle valves via the designer's software algorithms.
Sort of a variant of what Yamaha did with the V-Max. At 6.2k to 6.7k rpm they used a servo to open a butterfly valve between adjacent cylinders essentially joining two intake tracts together. This let the V-Max have small dia throttle bodies for excellent low and mid range power then use two throttle bodies joined by the opened butterfly valve for good top end punch.